My apologies for my belated response and thanks for getting back to me!
As far as options go I think the functions it had in the previous version we very good which allowed you to select the number of sequences to resample. I would also add the option to compare the resampled samples to each other statistically to see how different they actually are. It would also be nice to have an option to select how many new samples the program makes.
Finally I could not find any documentation on the methods for how the actual resamples were made so I believe that would be a nice addition! Thanks so much for looking into it!