On latest commit diamond runs normally, when using MEGAN’s daa-meganizer I get the following error:
java.io.IOException: readNullTerminatedBytes(): failed (EOF)
which I assume has to do with how diamond finishes the daa file.
Error is hard to replicate because if daa-meganizer is executed again, no error is prompted and file meganizes normally. When visualizing in MEGAN, reads are overwhelmingly binned in high taxonomic nodes.
Already raised an issue in diamond’s github