I’m not sure if this is a bug or the expected behaviour.
When I export a taxonomy from an rma6 file to text (readnames to taxonid) I get duplicates. I’m guessing it exports each read at each node it belongs to in the tree instead of only the most specific node. I have tested the command line export tool rma2info (v. 6.9.2; v. 6.10.5 does not export anything, see another bug report of mine) and the GUI (v. 6.10.5). In the GUI case I had the export dialog set to “assigned”.
I’m attaching an excerpt which is the result of
grep -C 3 seq00000001.
seq00000001.duplicates.tsv (875 Bytes)