I’m using DIAMOND with Nanopore reads and trying to output metadata using MEGAN. I’m able to output taxon name to length/percent/count no problem but I’d like to figure out what reads are associated with the species to get a handle on how many hits are being reported in these counts.
I tried to export metadata but I get an empty file with only headers #SampleID, matches. How can I get this list to populate? In addition, is there a mode where I can also report a score along with sample ID and match?