We are trying to export the number of assigned reads for particular taxon to csv format, however, it seems that the output is always summarized counts. We can visually see the assigned numbers in the GUI, which differs from the summarized. The problem comes during the export, the numbers doesn’t match.
Highlight taxon level we wish to export
File -> Export -> csv format -> taxonPath_to_count (also tried taxonName_to_count) -> assigned -> tab -> filename
I am not sure why this is so and it seems to happen for both MEGAN5 (v5.11.3) and MEGAN6 (v6.4) versions.
Thanks for your help!