Come somebody explain the LCA parameters. Explain please, don’t copy and paste from the manual that I’ve read .
Im working with a DNA control so I know the species that I have. With the version 5 of the program I get all the species if I select a LCA percent of 50 but in this version I don’t now how filter the reads according with the similarity parameter of blast (more 98%).
I have try with the new version V.6 where I have the in % identity but the LCA percent doesn’t appears in this version so Im not be able to arrive to the species level. I have try change all the parameters but nothing…
Any help please