We sequenced a metagenome and now want to know what species with how many reads were found overall. If possible in a table like this:
Pseudomonas fluorescens 24000
Escherichia coli 16000
We first used blastn to get all the species in our metagenome and are now importing the blast output to MEGAN.
Can anyone please help me out with that? I can’t find a way to get that kind of table although all information is available in seperate graphics…