I am working on the process of converting DAA files to RMA files using daa2rma command line.
From the website of MEGAN6:
There is a mapping file megan-map-Oct2019.db.zip from https://software-ab.informatik.uni-tuebingen.de/download/megan6/megan-map-Oct2019.db.zip
I suppose that megan-map-Oct2019.db.zip is for --mapDB parameter?
Does it mean there is no need to give input for the parameters such as --acc2taxa, --acc2eggnog and --acc2interpro2go?
In addition, I understand that megan-map-Oct2019.db.zip doesn’t contain information about KEGG pathways. But If I have data from KEGG website (https://www.genome.jp/kegg/) and is there any way that I can provide daa2rma with the KEGG data? If so, how?