I'm a beginner in MEGAN. I have a problem with InterPro classification.
I have a aminoacid sequences and I performed an alignment by using blastp and downloaded XML.file.
Then uploaded that file on MEGAN and on InterPro annotation, some sequences were annotated as Cardiolipin synthase, but when I inspected that node and see the alignment I founded that the name of protein was Copper oxydase. Using COG annotation it was resulting as multicopper oxydase. Have you any idea about this?
Thank you in advance.