Python package for parsing blast2lca outputs


#1

Hi all,

Our lab in Singapore SCELSE parses the output from blast2lca script in the tools folder quite often.

Not sure about the rest of you guys. :slight_smile:

I’ve decided to start incorporating the many perl / r scripts I have into a python colleciton on github as a -> repo to share.
Currently the example script in the repo does two things:

  1. converts blast2lca outputs into a .megan summary file
  2. generates a table which merges functional and taxonomic annotations on a read by read basis based on their read ID.

cheers!


#2

Thanks for the info
D