Our lab in Singapore SCELSE parses the output from
blast2lca script in the
tools folder quite often.
Not sure about the rest of you guys.
I've decided to start incorporating the many perl / r scripts I have into a python colleciton on github as a -> repo to share.
Currently the example script in the repo does two things:
- converts blast2lca outputs into a
.megan summary file
- generates a table which merges functional and taxonomic annotations on a read by read basis based on their read ID.