I am trying to use meganizer to process paired-end reads from one sample by running the following command:
daa-meganizer --in sample.R1.daa sample.R2.daa --paired --mapDB megan-map-Oct2019.db
It appears that it is not running properly to take into account the paired-end information by showing the warning below:
WARNING: Not an RMA6 file, will ignore paired read information
Any idea for how to run daa-meganizer command on paired-end data?