Hi MEGAN Community!
I am new in MEGAN, and I am interesting in a particular feature of this tool: Taxonomic profiling
For the purposes of my work, it is essential to obtain an estimate of the abundance of microorganism associated to the samples, at the species level.
I read the MEGAN paper and it is not clear to me if I can do this whit this tool. An ideal output for count reads will be:
B. subtillis 35 counts
P. fluorecens 50 counts
Can I have something similar with MEGAN?
Thank you for your help!