I am want to use Megan in order to analyze data generated using blastn from both, contigs (assembled with IDBA) and reads (75bp) that we were not able to ensemble. How can this be reflected in MEGAN? For example in the header id of contigs I know how many reads are used
and for the reads I have
I want to consider this information for example for compare samples and for rarefaction, shannon index, etc. But, even do I have contigs that have for example 100,000 reads, Megan takes it as one.