The MEGAN 6 paper is now online!


Here is the link :


For some reason I wasn’t able to access MEGAN community so I posted my question to the comments section of the journal article. Please see below:

Thank you for developing these user friendly tools for analyzing high throughput metagenomic seq data.
Could you please provide the parameter settings used to achieve these analyses runtimes? I am currently using your programs to analyze long reads (230bp) HiSeq metagenomic data and I am stuck at the DIAMOND stage. It would be very useful to see what settings were used and what trade-offs were made.